STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88119.1TRAP transporter, DctM subunit. (435 aa)    
Predicted Functional Partners:
SDO88061.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.914
SDO88090.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.857
SDO34564.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.792
SDO34529.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.790
SDO34829.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.787
SDO34800.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.758
SDP43581.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.748
SDP15403.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.719
SDO88643.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.717
SDP42571.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
  
 0.703
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.