STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO89401.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (332 aa)    
Predicted Functional Partners:
SDO89458.1
TRAP transporter, DctM subunit.
 
  
 0.949
SDO89429.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.932
SDP07282.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP32597.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP42338.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP42613.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP43518.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP43543.1
Tripartite ATP-independent transporter, DctM component.
 
  
 0.786
SDP51923.1
TRAP transporter, DctM subunit.
 
  
 0.786
SDP84025.1
TRAP transporter, DctM subunit.
 
  
 0.786
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.