STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO89492.1Agmatinase; Belongs to the arginase family. (321 aa)    
Predicted Functional Partners:
SDP30816.1
Glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase.
  
 
  0.887
SDP21080.1
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
 
 0.826
SDO49842.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.762
SDO89401.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.762
SDO89429.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
       0.762
SDO89458.1
TRAP transporter, DctM subunit.
       0.762
SDO89373.1
DNA-binding transcriptional regulator, GntR family.
  
    0.698
SDP64315.1
Glutamate formiminotransferase.
  
 
  0.680
SDO39891.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.667
SDP37520.1
N-acetylglutamate synthase, GNAT family; Belongs to the acetyltransferase family.
  
 
 0.649
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.