STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP03080.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
SDP03106.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.949
SDP03053.1
Type IV pilus assembly protein PilB.
       0.598
SDP37082.1
Adenylate cyclase, class 3.
  
     0.542
SDO58407.1
Glycosyltransferase family 10 (fucosyltransferase) C-term.
 
     0.506
SDO50047.1
Methylamine utilisation protein MauE.
 
     0.446
SDP61768.1
Ribosome-associated protein; Belongs to the UPF0307 family.
  
     0.438
SDO62795.1
Curved DNA-binding protein.
  
     0.418
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.