STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP03564.1Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (538 aa)    
Predicted Functional Partners:
SDP03529.1
Haloalkane dehalogenase.
 
 0.996
SDP03593.1
Nucleoside-diphosphate-sugar epimerase.
 
 
 0.957
SDP75129.1
3-oxoacyl-[acyl-carrier-protein] synthase-3.
  
 0.902
SDP08975.1
Acyl carrier protein.
 
 0.890
SDO57456.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
0.884
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.866
SDP03621.1
Putative Zn-dependent protease, contains TPR repeats.
       0.788
SDP49535.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 
 0.786
SDP09000.1
Phytoene dehydrogenase-related protein.
 
     0.738
SDP09028.1
Phytoene dehydrogenase-related protein.
 
     0.738
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.