STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP05361.1Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains. (642 aa)    
Predicted Functional Partners:
SDP57313.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.793
SDP15485.1
Signal transduction histidine kinase.
    
 0.679
SDP81262.1
Polar amino acid transport system substrate-binding protein.
    
 0.679
SDP51490.1
Signal transduction histidine kinase.
    
 0.670
SDP29896.1
Hpt domain-containing protein.
    
 0.669
SDP75706.1
PAS domain S-box-containing protein.
    
 0.665
SDP80432.1
Signal transduction histidine kinase.
    
 0.661
SDP82951.1
PAS domain S-box-containing protein.
    
 0.658
SDP82931.1
PAS domain S-box-containing protein.
    
 0.654
SDP80387.1
PAS domain S-box-containing protein.
    
 0.611
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.