STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP25048.1Membrane fusion protein, adhesin transport system. (388 aa)    
Predicted Functional Partners:
SDP25019.1
ATP-binding cassette, subfamily C, LapB.
 0.994
SDP24995.1
Type I secretion outer membrane protein, TolC family.
 0.982
SDO84850.1
ATP-binding cassette, subfamily C, LapB.
 0.966
SDP34694.1
ATP-binding cassette, subfamily B, HlyB/CyaB.
 0.948
SDP83165.1
Outer membrane protein, adhesin transport system.
 
 0.926
SDP24962.1
Ig-like domain (group 3).
 
  
 0.796
SDP34777.1
Outer membrane efflux protein.
 
 0.775
SDO87872.1
ABC-type multidrug transport system, ATPase and permease component.
  
 0.763
SDP65163.1
Hypothetical protein.
 
  
 0.739
SDO40929.1
Outer membrane protein TolC.
  
 0.738
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.