STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP39079.1Hydrogenase-4 component E. (217 aa)    
Predicted Functional Partners:
SDP39042.1
Ni,Fe-hydrogenase III large subunit.
 
  
 0.990
SDP39023.1
Ni,Fe-hydrogenase III small subunit.
 
  
 0.981
SDP39096.1
Formate hydrogenlyase subunit 4.
 
  
 0.977
SDP39058.1
Hydrogenase-4 component F.
 
  
 0.971
SDP39111.1
Hypothetical protein.
 
  
 0.956
SDO90659.1
Dicarboxylate transport.
  
     0.455
SDP73412.1
Multisubunit sodium/proton antiporter, MrpD subunit.
 
  
 0.437
SDP65709.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.413
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.