STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP39163.1Transcriptional regulator, IclR family. (247 aa)    
Predicted Functional Partners:
SDO34864.1
Transcriptional regulator, IclR family.
  
     0.775
SDO57101.1
Transcriptional regulator, IclR family.
  
     0.775
SDP72379.1
Transcriptional regulator, IclR family.
  
     0.775
SDP86936.1
Transcriptional regulator, IclR family.
  
     0.773
SDP52661.1
Transcriptional regulator.
  
     0.772
SDP46479.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
 0.633
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.633
SDP39130.1
Two-component system, NtrC family, response regulator.
       0.601
SDP39150.1
Signal transduction histidine kinase.
       0.601
SDP71712.1
Pyruvate carboxylase.
    
  0.464
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.