STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP41839.1Transcriptional regulator, XRE family with cupin sensor. (222 aa)    
Predicted Functional Partners:
SDP63296.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.696
SDO71583.1
Aspartate aminotransferase.
    
  0.649
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.645
SDP37520.1
N-acetylglutamate synthase, GNAT family; Belongs to the acetyltransferase family.
  
 
  0.604
SDP41860.1
Aldehyde:ferredoxin oxidoreductase.
       0.594
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.545
SDP36496.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
    
  0.517
SDP32459.1
Protein of unknown function.
    
  0.444
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.