STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP57758.1CRISPR system Cascade subunit CasB. (172 aa)    
Predicted Functional Partners:
SDP57736.1
CRISPR system Cascade subunit CasA.
  
 
 0.998
SDP57794.1
CRISPR system Cascade subunit CasC.
  
 
 0.997
SDP57777.1
CRISPR-associated protein, Cse3 family.
  
 
 0.996
SDP57817.1
CRISPR-associated protein, Cas5e family.
  
 
 0.994
SDP57718.1
CRISPR-associated endonuclease/helicase Cas3.
  
  
 0.790
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
  
 0.646
SDP57860.1
CRISPR-associated protein, Cas2 family.
     
 0.627
SDP57697.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.489
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.