STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP62894.1Glyoxylase, beta-lactamase superfamily II. (241 aa)    
Predicted Functional Partners:
SDP46002.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.834
SDP55891.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.834
SDP66403.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.834
SDO82531.1
Glyoxylase, beta-lactamase superfamily II.
  
 0.705
SDO47473.1
Sulfide:quinone oxidoreductase.
   
 0.699
SDP55530.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.668
SDP72400.1
PAS fold-containing protein.
    
 
 0.655
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.620
rsmH
16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
   0.602
SDO50013.1
Rhodanese-related sulfurtransferase.
 
 0.578
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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