STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP64575.1Transcriptional regulator, IclR family. (281 aa)    
Predicted Functional Partners:
SDP64589.1
Hypothetical protein.
       0.773
SDP52661.1
Transcriptional regulator.
  
     0.769
SDP46479.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
 0.633
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.633
SDP71712.1
Pyruvate carboxylase.
    
  0.464
SDP72015.1
Acetyl-CoA carboxylase, carboxyltransferase component.
    
  0.464
SDP79832.1
SAF domain-containing protein.
 
  
 0.430
SDP64604.1
Energy-coupling factor transport system ATP-binding protein.
       0.412
SDO56926.1
Regulatory protein, gntR family.
 
  
 0.405
SDP79816.1
Altronate dehydratase large subunit.
 
  
 0.405
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.