STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP65666.1Protein of unknown function. (965 aa)    
Predicted Functional Partners:
SDO99604.1
Protein of unknown function.
 
  
 0.596
SDO59252.1
Cupin domain-containing protein.
  
     0.594
SDP44149.1
Rubrerythrin.
  
     0.563
SDP46255.1
Two-component system, NtrC family, sensor kinase.
  
     0.544
SDO90659.1
Dicarboxylate transport.
 
   
 0.503
SDP16654.1
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.503
SDP65679.1
tRNA-splicing ligase RtcB.
       0.495
SDP19183.1
Type II transport protein GspH.
 
     0.478
SDO47236.1
DivIVA domain-containing protein.
  
     0.458
SDO49059.1
Hypothetical protein.
   
    0.454
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.