STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP66317.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (477 aa)    
Predicted Functional Partners:
SDP66336.1
PAS domain S-box-containing protein.
 
 0.921
SDP15110.1
PAS domain S-box-containing protein.
  
 0.835
SDP75706.1
PAS domain S-box-containing protein.
  
 0.796
SDP81262.1
Polar amino acid transport system substrate-binding protein.
  
 0.790
SDP82931.1
PAS domain S-box-containing protein.
 
 0.778
SDP51490.1
Signal transduction histidine kinase.
  
 0.762
SDP29896.1
Hpt domain-containing protein.
  
 0.760
SDP80432.1
Signal transduction histidine kinase.
  
 0.749
SDP15485.1
Signal transduction histidine kinase.
  
 0.748
SDO53494.1
PAS domain S-box-containing protein.
 
 
 0.744
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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