STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP77693.1Transcriptional regulator, MarR family. (166 aa)    
Predicted Functional Partners:
SDP33024.1
Aspartate kinase.
 
   
 0.717
SDP29462.1
Transketolase, C-terminal subunit.
     
 0.636
SDP77647.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
    
 0.470
SDP77678.1
Hypothetical protein.
       0.429
SDP75706.1
PAS domain S-box-containing protein.
  
 
 0.406
SDO67829.1
Lactoylglutathione lyase family protein.
 
  
 0.402
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.