STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP82043.1CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (396 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.690
SDP67751.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.671
SDO80794.1
methylmalonyl-CoA mutase.
    
 0.669
SDP82029.1
glutaconyl-CoA decarboxylase beta subunit.
       0.642
SDP46479.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
 0.640
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.594
SDP13463.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.537
SDO39431.1
Uncharacterized iron-regulated protein.
    
  0.499
SDP45115.1
Acyl dehydratase.
  
 
 0.454
SDP71795.1
Acyl dehydratase.
  
 
 0.454
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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