STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP82568.1EamA domain-containing membrane protein RarD. (308 aa)    
Predicted Functional Partners:
SDO47236.1
DivIVA domain-containing protein.
  
     0.577
SDP08693.1
Cytochrome c554 and c-prime.
  
    0.572
SDP25594.1
Membrane associated serine protease, rhomboid family.
 
    0.563
SDP09442.1
Chaperone TorD involved in molybdoenzyme TorA maturation.
  
     0.536
dsdA-2
D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
       0.463
SDO76228.1
Hypothetical protein.
 
     0.451
SDP25770.1
Tetratricopeptide repeat-containing protein.
 
   0.446
SDP08666.1
Collagenase-like protease, PrtC family.
  
     0.441
SDP08557.1
Hypothetical protein.
  
     0.434
SDO58657.1
Putative zinc-or iron-chelating domain-containing protein.
 
    0.401
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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