STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP82828.1Hypothetical protein. (406 aa)    
Predicted Functional Partners:
SDP82811.1
Exodeoxyribonuclease VIII.
 
  
 0.838
SDP82796.1
Hypothetical protein.
       0.707
SDP82783.1
Hypothetical protein.
       0.678
SDO88975.1
Oxygen-dependent protoporphyrinogen oxidase.
  
     0.583
SDO95422.1
Phage terminase, large subunit GpA.
  
     0.527
SDP29066.1
Hypothetical protein.
 
     0.512
SDP82758.1
Hypothetical protein.
       0.512
SDP82771.1
Hypothetical protein.
       0.512
SDP80139.1
Di-and tricarboxylate transporter.
  
     0.499
SDO95661.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.