STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP83173.1Transglutaminase-like cysteine proteinase BTLCP. (235 aa)    
Predicted Functional Partners:
SDP83183.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.984
SDO84850.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.803
SDP83165.1
Outer membrane protein, adhesin transport system.
 
   
 0.798
SDO84876.1
Membrane fusion protein, adhesin transport system.
 
  
 0.797
SDO84820.1
Hypothetical protein.
 
     0.783
SDP25048.1
Membrane fusion protein, adhesin transport system.
 
  
 0.693
SDP25019.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.660
SDP34719.1
Hemolysin D.
 
  
 0.656
SDP25970.1
Dissimilatory adenylylsulfate reductase alpha subunit precursor.
     
 0.530
SDP62818.1
Sulfate adenylyltransferase.
     
 0.526
Your Current Organism:
Desulforhopalus singaporensis
NCBI taxonomy Id: 91360
Other names: D. singaporensis, DSM 12130, Desulforhopalus singaporensis Lie et al. 2000, strain Spore T1
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