STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TQ33_0845GCN5-related N-acetyltransferase; Pfam:pfam00583 Acetyltransferase (GNAT) family. (165 aa)    
Predicted Functional Partners:
TQ33_0843
Pfam:pfam13703 PepSY-associated TM helix.
 
     0.546
TQ33_0707
Pfam:pfam13434 L-lysine 6-monooxygenase (NADPH-requiring).
  
  
 0.522
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.497
TQ33_0842
TonB-dependent receptor plug; Pfam:pfam00593 TonB dependent receptor.
       0.413
Your Current Organism:
Kangiella geojedonensis
NCBI taxonomy Id: 914150
Other names: CCUG 60526, K. geojedonensis, KCTC 23420, Kangiella geojedonensis Yoon et al. 2012, Kangiella sp. YCS-5, strain YCS-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.