STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCO7_05909Fibronectin type-III domain-containing protein. (1251 aa)    
Predicted Functional Partners:
RCO7_06245
Probable ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.798
RCO7_00203
Probable aspartate-semialdehyde dehydrogenase.
   
 
  0.666
RCO7_08006
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
    
 0.618
RCO7_02548
Probable S-adenosylmethionine decarboxylase proenzyme 2.
     
 0.590
RCO7_03244
Tryptophan synthase.
  
  
 0.577
RCO7_11369
Probable biotin synthase.
   
 
  0.576
RCO7_05017
annotation not available
   
 
  0.484
RCO7_00053
Related to aerobactin siderophore biosynthesis protein iucB.
   
 
  0.484
RCO7_06457
Protein ARG5,6, mitochondrial; In the N-terminal section; belongs to the acetylglutamate kinase family.
   
  
 0.479
RCO7_01194
Probable agmatinase; Belongs to the arginase family.
    
 0.447
Your Current Organism:
Rhynchosporium commune
NCBI taxonomy Id: 914237
Other names: ETH ZT Myc2338, R. commune, RS02CH1B, RS99CH6-C1a, Rhynchosporium commune Zaffarano, McDonald and Linde 2010
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