STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCO7_00103Ornithine aminotransferase. (475 aa)    
Predicted Functional Partners:
RCO7_06457
Protein ARG5,6, mitochondrial; In the N-terminal section; belongs to the acetylglutamate kinase family.
  
 
 0.996
RCO7_07798
Arginase; Belongs to the arginase family.
  
 0.984
RCO7_05065
Probable argininosuccinate lyase.
  
 
 0.937
RCO7_07212
ARG1 Argininosuccinate synthetase.
  
 0.909
RCO7_07195
Probable glutamate 5-kinase.
   
 0.902
RCO7_08570
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.898
RCO7_06245
Probable ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.898
RCO7_03440
Probable ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
 
 0.898
RCO7_05194
Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.
  
 
 0.873
RCO7_04337
Related to glutamate-5-semialdehyde dehydrogenase.
   
 0.867
Your Current Organism:
Rhynchosporium commune
NCBI taxonomy Id: 914237
Other names: ETH ZT Myc2338, R. commune, RS02CH1B, RS99CH6-C1a, Rhynchosporium commune Zaffarano, McDonald and Linde 2010
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