STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX83966.1Radical SAM domain protein; [R] COG0535 Predicted Fe-S oxidoreductases. (337 aa)    
Predicted Functional Partners:
EDX87080.1
3-beta hydroxysteroid dehydrogenase/isomerase family; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
 
     0.874
EDX87403.1
Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase.
 
   
 0.823
EDX84018.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.820
EDX84551.1
[I] COG1657 Squalene cyclase.
 
   
 0.787
EDX84839.1
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.773
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.744
EDX85338.1
RND transporter, HAE1/HME family, permease protein; [V] COG0841 Cation/multidrug efflux pump.
 
     0.517
EDX85173.1
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.516
EDX83719.1
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.510
EDX83845.1
Cyclic peptide transporter subfamily; [V] COG0534 Na+-driven multidrug efflux pump.
 
     0.506
Your Current Organism:
Synechococcus sp. PCC7335
NCBI taxonomy Id: 91464
Other names: Coccusdissimilis mexicanus PCC 7335, S. sp. PCC 7335, Synechococcus PCC 7335, Synechococcus PCC7335, Synechococcus mexicanus PCC 7335, Synechococcus sp. PCC 7335
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