STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX87237.1Phytanoyl-CoA dioxygenase (PhyH) superfamily. (300 aa)    
Predicted Functional Partners:
EDX86329.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
  
 0.715
EDX86159.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
  
 0.650
EDX83677.1
KR domain family; [Q] COG3321 Polyketide synthase modules and related proteins.
  
 0.647
EDX86336.1
Ammonium Transporter Family subfamily; [P] COG0004 Ammonia permease.
  
     0.632
EDX85154.1
FAD linked oxidase, C-terminal domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
   
 0.617
EDX86163.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
   
 0.617
EDX86970.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
   
 0.617
EDX87574.1
Glutamine synthetase, catalytic domain, putative; [E] COG0174 Glutamine synthetase.
 
    0.617
EDX84074.1
Peptidase, M24 family; [E] COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
 0.549
EDX84449.1
Peptidase, M24 family; [E] COG0006 Xaa-Pro aminopeptidase.
    
 0.549
Your Current Organism:
Synechococcus sp. PCC7335
NCBI taxonomy Id: 91464
Other names: Coccusdissimilis mexicanus PCC 7335, S. sp. PCC 7335, Synechococcus PCC 7335, Synechococcus PCC7335, Synechococcus mexicanus PCC 7335, Synechococcus sp. PCC 7335
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