node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDX86364.1 | EDX87755.1 | S7335_4068 | S7335_5465 | Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase. | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | 0.976 |
EDX86762.1 | EDX87755.1 | S7335_4468 | S7335_5465 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | 0.983 |
EDX86762.1 | rpsD | S7335_4468 | S7335_2028 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
EDX86762.1 | rpsE | S7335_4468 | S7335_5361 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
EDX86762.1 | rpsH | S7335_4468 | S7335_3376 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
EDX86762.1 | rpsK | S7335_4468 | S7335_3211 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
EDX86762.1 | rpsL | S7335_4468 | S7335_2624 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
EDX86762.1 | rpsQ | S7335_4468 | S7335_4961 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
EDX86762.1 | rpsS | S7335_4468 | S7335_2944 | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
EDX87403.1 | EDX87755.1 | S7335_5112 | S7335_5465 | Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase. | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | 0.976 |
EDX87755.1 | EDX86364.1 | S7335_5465 | S7335_4068 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase. | 0.976 |
EDX87755.1 | EDX86762.1 | S7335_5465 | S7335_4468 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.983 |
EDX87755.1 | EDX87403.1 | S7335_5465 | S7335_5112 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase. | 0.976 |
EDX87755.1 | rpsD | S7335_5465 | S7335_2028 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.981 |
EDX87755.1 | rpsE | S7335_5465 | S7335_5361 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.993 |
EDX87755.1 | rpsH | S7335_5465 | S7335_3376 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.982 |
EDX87755.1 | rpsK | S7335_5465 | S7335_3211 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.980 |
EDX87755.1 | rpsL | S7335_5465 | S7335_2624 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.983 |
EDX87755.1 | rpsQ | S7335_5465 | S7335_4961 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.983 |
EDX87755.1 | rpsS | S7335_5465 | S7335_2944 | Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.981 |