STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AUD_1658ATP-dependent RNA helicase suv3, mitochondrial. (776 aa)    
Predicted Functional Partners:
AUD_4787
Mitochondrial protein cyt-4.
   
 0.987
AUD_2324
Exosome complex exonuclease dis3; Belongs to the RNR ribonuclease family.
   
 0.976
AUD_7824
Protein SSD1.
   
 0.976
AUD_6293
Uncharacterized protein.
   
 0.954
AUD_2798
ATP-dependent RNA helicase mtr4.
   
 
 0.924
AUD_6155
Exosome complex component RRP42.
   
 
  0.906
AUD_4602
Nuclear nucleic acid-binding protein C1D.
    
  0.903
AUD_1836
Uncharacterized protein.
   
 
 0.898
AUD_3236
Exosome complex component rrp43.
   
 
  0.896
AUD_7629
Uncharacterized AAA domain-containing protein C16E9.10c.
     
 0.892
Your Current Organism:
Aspergillus udagawae
NCBI taxonomy Id: 91492
Other names: A. udagawae, CBM FA-0702, CBS 114217, Neosartorya udagawae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.