STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AUD_2851E3 ubiquitin-protein ligase Zswim2. (346 aa)    
Predicted Functional Partners:
AUD_2481
Polyubiquitin.
    
 0.781
AUD_2266
Kexin.
    
  0.742
AUD_8757
RNA polymerase I-specific transcription initiation factor rrn7.
    
 0.733
AUD_8758
Ubiquitin-60S ribosomal protein L40.
    
 0.733
AUD_2883
BZIP domain-containing protein.
    
 0.690
AUD_4168
Ubiquitin-40S ribosomal protein S27a.
    
 0.690
AUD_3573
Anaphase-promoting complex subunit 8.
    
  0.674
AUD_2338
Ubiquitin-conjugating enzyme spm2.
   
  0.652
AUD_1305
Ubiquitin-conjugating enzyme E2 1; Belongs to the cyclin family.
    
 0.648
AUD_8230
Anaphase-promoting complex subunit 10.
   
 
 0.633
Your Current Organism:
Aspergillus udagawae
NCBI taxonomy Id: 91492
Other names: A. udagawae, CBM FA-0702, CBS 114217, Neosartorya udagawae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.