STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AUD_3188Protein saf1. (290 aa)    
Predicted Functional Partners:
AUD_6903
DNA replication protein 4.
    
 
 0.952
AUD_6749
Pre-mRNA-processing factor 17.
    
 
 0.951
AUD_1141
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.938
AUD_1048
Small nuclear ribonucleoprotein G.
    
   0.938
AUD_1757
Pre-mRNA-splicing factor syf1.
    
   0.938
AUD_1897
Pre-mRNA-processing factor 19.
    
   0.938
AUD_2743
Small nuclear ribonucleoprotein-associated protein B.
    
   0.938
AUD_4720
U5 small nuclear ribonucleoprotein 40 kDa protein.
    
   0.938
AUD_9696
Pre-mRNA-processing-splicing factor 8.
    
   0.938
AUD_9199
Pre-mRNA-splicing factor slt11.
    
   0.938
Your Current Organism:
Aspergillus udagawae
NCBI taxonomy Id: 91492
Other names: A. udagawae, CBM FA-0702, CBS 114217, Neosartorya udagawae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.