STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AUD_5351Alpha-L-rhamnosidase rgxB; Belongs to the glycosyl hydrolase 28 family. (449 aa)    
Predicted Functional Partners:
AUD_4591
Uncharacterized protein; Belongs to the complex I LYR family.
    
 0.731
AUD_7896
Nipped-B-like protein B.
    
  0.711
AUD_2897
Ankyrin repeat protein nuc-2.
    
 0.703
AUD_4546
60S ribosomal protein L21-A.
   
   0.694
AUD_0853
Probable endopolygalacturonase D.
    
0.687
AUD_1730
Glycerophosphodiester phosphodiesterase GDE1.
    
  0.675
AUD_7539
Probable alpha-N-arabinofuranosidase B.
     
 0.669
AUD_2331
50S ribosomal protein L2.
   
 
 0.640
AUD_2931
Mitochondrial import receptor subunit tom-40.
   
 0.636
AUD_1223
60S ribosomal protein L2.
   
 
 0.635
Your Current Organism:
Aspergillus udagawae
NCBI taxonomy Id: 91492
Other names: A. udagawae, CBM FA-0702, CBS 114217, Neosartorya udagawae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.