STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AUD_972626S proteasome regulatory subunit rpn11. (335 aa)    
Predicted Functional Partners:
AUD_1306
26S protease regulatory subunit 4 homolog.
   
 0.999
AUD_1741
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.999
AUD_2673
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.999
AUD_4156
26S protease regulatory subunit 6B homolog; Belongs to the AAA ATPase family.
  
 0.999
AUD_4366
26S proteasome regulatory subunit rpn12.
   
 0.999
AUD_4578
26S proteasome non-ATPase regulatory subunit 12.
   
 0.999
AUD_4469
26S protease regulatory subunit 7 homolog; Belongs to the AAA ATPase family.
   
 0.999
AUD_6346
26S proteasome regulatory subunit rpn10.
   
 0.999
AUD_6791
26S proteasome regulatory subunit RPN7.
   
 0.999
AUD_6698
Probable 26S protease subunit rpt4; Belongs to the AAA ATPase family.
  
 0.999
Your Current Organism:
Aspergillus udagawae
NCBI taxonomy Id: 91492
Other names: A. udagawae, CBM FA-0702, CBS 114217, Neosartorya udagawae
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