STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_00540Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)    
Predicted Functional Partners:
NH26_00555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.877
NH26_00550
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.860
NH26_00545
Galactoside O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.801
NH26_03950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.766
NH26_00535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.755
NH26_00430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.736
NH26_00500
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
NH26_21825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.611
NH26_04000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.603
NH26_03960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.572
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.