STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_02070Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)    
Predicted Functional Partners:
NH26_00960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.665
NH26_16680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.614
NH26_02075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.603
NH26_13040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.570
NH26_20745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.538
NH26_02065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family.
       0.520
NH26_10065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.505
NH26_16205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
NH26_20365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.483
NH26_19855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.482
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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