STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_03835AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
NH26_02780
Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.713
NH26_09420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.628
NH26_17265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
NH26_08070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
NH26_08065
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.580
NH26_05790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.564
NH26_03830
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
NH26_18120
CRISPR-associated endoribonuclease Cas6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.437
NH26_10910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.423
NH26_06410
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.403
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.