STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_06145S9 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)    
Predicted Functional Partners:
NH26_06140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.741
NH26_00035
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
  
 
  0.683
NH26_13245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.583
NH26_14570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.567
NH26_14575
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
NH26_06135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.532
NH26_06150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
       0.489
NH26_18850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
NH26_18630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.402
NH26_15655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.400
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.