STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_07150Alpha-amylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (564 aa)    
Predicted Functional Partners:
NH26_02980
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.830
NH26_10920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.777
NH26_12405
Bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.766
NH26_04910
1,4-alpha-glucan-branching enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.755
NH26_00975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.737
NH26_10565
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.686
NH26_20530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.546
NH26_01225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.536
NH26_08970
Alpha-glucan family phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.536
NH26_08055
Type I pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.509
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.