STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_08095Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)    
Predicted Functional Partners:
NH26_11005
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
fabZ
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
   
 0.625
NH26_05500
Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
NH26_05440
Prenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
NH26_08805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.567
NH26_13815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.557
NH26_13425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.554
NH26_05945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.543
NH26_12405
Bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.531
NH26_08085
L-asparaginase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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