STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_09310Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase C1 family. (368 aa)    
Predicted Functional Partners:
NH26_05180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.768
NH26_09305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.613
NH26_20260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
NH26_09315
Membrane protein insertion efficiency factor YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.524
NH26_09950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
NH26_18845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
NH26_01500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.417
NH26_18455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.410
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.