STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_09355ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
NH26_09350
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
NH26_09365
Cytochrome C biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.995
NH26_09360
CcmD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.924
NH26_09340
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.838
NH26_04290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
NH26_16380
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.644
NH26_18290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.644
NH26_14810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.642
NH26_11955
Membrane receptor RagA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
NH26_12190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.593
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.