STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_09705L-fucose:H+ symporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
NH26_09700
L-rhamnose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.920
NH26_09720
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
NH26_09695
Bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
NH26_09690
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
NH26_09710
L-iditol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.679
NH26_09685
Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
NH26_09715
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.638
NH26_14520
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
NH26_09680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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