STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_09735Acetylglucosamine-6-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)    
Predicted Functional Partners:
NH26_09740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.841
NH26_24240
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
     0.768
aga4383
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.763
NH26_24670
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
     0.759
NH26_09745
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
NH26_22100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.744
NH26_21380
Sucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
NH26_22230
Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
NH26_24665
Rhamnose/proton symporter RhaT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
NH26_09730
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
  
  0.706
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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