STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_13370Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
NH26_13375
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.819
NH26_08960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
NH26_12625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.756
NH26_12210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.747
NH26_00320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.735
NH26_11360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.729
NH26_18355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.729
NH26_18235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
NH26_14135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.702
NH26_14160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.697
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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