STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_13790Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (589 aa)    
Predicted Functional Partners:
NH26_21590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.782
NH26_11025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.759
NH26_13785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
NH26_05150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.750
NH26_12885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.724
NH26_22575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.633
NH26_11490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.614
NH26_14970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.608
NH26_06040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.598
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.587
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.