STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_19040Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (637 aa)    
Predicted Functional Partners:
NH26_19045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.848
NH26_19050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.756
NH26_17310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
NH26_13525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.707
NH26_10000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.686
NH26_04800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.677
NH26_09520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.675
NH26_18590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.658
NH26_19035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.642
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.640
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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