STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_20755Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (366 aa)    
Predicted Functional Partners:
NH26_22435
Pyruvate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.864
NH26_02725
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.692
NH26_06010
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.658
NH26_06425
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.623
NH26_05765
3-deoxy-7-phosphoheptulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.616
NH26_16645
Alcaligin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.586
NH26_04270
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.585
NH26_20760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.563
NH26_11750
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.475
NH26_16660
IucA/IucC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.462
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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