STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_23945Sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)    
Predicted Functional Partners:
NH26_05545
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.898
NH26_03775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.865
NH26_22115
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.758
NH26_02430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cytochrome P450 family.
  
 0.666
NH26_08255
Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
  
 0.658
NH26_12410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.657
NH26_03240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.576
NH26_22210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.565
NH26_20470
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.544
NH26_13720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.533
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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