STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH26_24205Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)    
Predicted Functional Partners:
NH26_24200
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.728
NH26_13030
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.658
NH26_08680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.641
NH26_24210
Hypothetical protein; Converts alpha-aldose to the beta-anomer.
       0.620
NH26_07215
NADP-dependent malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.616
NH26_02880
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.584
NH26_03465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.584
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 0.540
NH26_24195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.523
NH26_24370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.522
Your Current Organism:
Flammeovirga pacifica
NCBI taxonomy Id: 915059
Other names: CCTCC AB 2010364, DSM 24597, F. pacifica, Flammeovirga pacifica Xu et al. 2012, Flammeovirga sp. WPAGA1, LMG 26175, LMG:26175, MCCC 1A06425, strain WPAGA1
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