STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI95295.1CHAD domain-containing protein. (256 aa)    
Predicted Functional Partners:
SEI83473.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.768
SEJ16028.1
Phosphoglycerol transferase MdoB.
  
     0.757
SEJ63258.1
Protein of unknown function.
  
     0.740
SEI93077.1
Peptidoglycan-binding protein, CsiV.
  
     0.738
SEI55874.1
Hypothetical protein.
  
     0.721
SEJ82933.1
Hypothetical protein.
  
     0.717
SEI55847.1
Hypothetical protein.
  
     0.711
SEI55897.1
Hypothetical protein.
  
     0.708
SEJ57407.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains; Belongs to the peptidase S24 family.
  
     0.701
SEJ18559.1
Outer membrane porin, OprD family.
  
     0.697
Your Current Organism:
Pseudomonas linyingensis
NCBI taxonomy Id: 915471
Other names: CGMCC 1.10701, LMG 25967, LMG:25967, P. linyingensis, Pseudomonas linyingensis He et al. 2015, Pseudomonas sp. LYBRD3-7, strain LYBRD3-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.