STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ47825.1NAD(P)H-flavin reductase. (281 aa)    
Predicted Functional Partners:
SEJ47803.1
4Fe-4S dicluster containing protein.
 
 0.996
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.959
SEJ47779.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.871
SEI81245.1
Glutamate synthase (NADPH) small subunit.
 
 0.862
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
 
 0.854
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 0.834
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.829
SEJ07264.1
Dihydroorotase.
  
 
 0.815
pyrF
Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
 
 
 0.808
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.773
Your Current Organism:
Pseudomonas linyingensis
NCBI taxonomy Id: 915471
Other names: CGMCC 1.10701, LMG 25967, LMG:25967, P. linyingensis, Pseudomonas linyingensis He et al. 2015, Pseudomonas sp. LYBRD3-7, strain LYBRD3-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.