STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ62381.1FRG domain-containing protein. (252 aa)    
Predicted Functional Partners:
SEJ62400.1
23S rRNA (cytosine1962-C5)-methyltransferase; Belongs to the methyltransferase superfamily.
 
     0.630
SEJ62363.1
Fusaric acid resistance protein-like.
       0.467
SEJ32965.1
Membrane protein YqaA, SNARE-associated domain.
  
     0.436
Your Current Organism:
Pseudomonas linyingensis
NCBI taxonomy Id: 915471
Other names: CGMCC 1.10701, LMG 25967, LMG:25967, P. linyingensis, Pseudomonas linyingensis He et al. 2015, Pseudomonas sp. LYBRD3-7, strain LYBRD3-7
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